msafara terminal MSA explorer

Explore multiple sequence alignments with fast navigation, rich search, phylogeny display, custom views, and session persistence, from the comfort of your terminal.

Documentation & downloads

Open the guides, pull the source, or install from crates.io. The TUI is designed for both local terminal use or SSH sessions to headless servers.

Documentation userguide.md GitHub repository github.com crates.io package cargo install v0.3.0beta release (OSX and Linux) ready-to-run binaries

Features

Search Regex + EMBOSS motif search with live highlights.
Views Original, filtered, rejected, and custom view sets.
Tree Realign with mafft, navigate via tree selection.
Export SVG snapshot of the current view.
msafara running in a terminal window